PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03303.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 305aa    MW: 33683.7 Da    PI: 4.3699
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03303.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.51.6e-09148187443
                              XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                               k+  r+ +NR AA rsR+RKk+++  Le+k+k Le e  
  Rsa1.0_03303.1_g00004.1 148 AKKRTRRVRNRDAAVRSRERKKEYVTDLEKKSKYLERECI 187
                              69999******************************99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.9E-12142207No hitNo description
SMARTSM003380.003143209IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.105147204IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.25E-11149205No hitNo description
PfamPF077163.0E-8149189IPR004827Basic-leucine zipper domain
CDDcd147047.60E-19150201No hitNo description
PROSITE patternPS000360153167IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAEELGCVDF LGGDDDLFSD IDLSLFTETP IACDLIRSSP ESGNSWIGDI ESQLMNDEDN  60
QNFQELDQQS VSEFLADIFA DDPTSDSVDL VTGKVVPTEG FVNGKGPEGS DDAGKEKAVE  120
KKLNDSGSEN QDEAKVESEI SGDDDAMAKK RTRRVRNRDA AVRSRERKKE YVTDLEKKSK  180
YLERECIRLG RMLDCFVAEN HSLRLCLQKG SGGNASMMTR QESAVLLLES LLLGSLLWYL  240
GDIICPFLPL PQPETCFPPV EADGSENLVL SGLESNKLSN NYAGKSRRCK GSRPRMKHQV  300
CILVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0459642e-81AY045964.1 Arabidopsis thaliana putative bZIP transcription factor (At1g42990) mRNA, complete cds.
GenBankAY1338052e-81AY133805.1 Arabidopsis thaliana clone U10320 putative bZIP transcription factor (At1g42990) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013702826.11e-172PREDICTED: bZIP transcription factor 60-like
SwissprotQ9C7S02e-74BZP60_ARATH; bZIP transcription factor 60
TrEMBLA0A0D3DKD71e-171A0A0D3DKD7_BRAOL; Uncharacterized protein
STRINGBra034925.1-P7e-73(Brassica rapa)
STRINGAT1G42990.15e-72(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46342848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.11e-73basic region/leucine zipper motif 60